Biological Sequence Analysis Using the Seqan C++ Library

Un libro in lingua di Gogol Doring Andreas, Reinert Knut edito da Taylor & Francis, 2009

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The Algorithmic Bioinformatics group at the Freie Universität Berlin presents their open source C++ template library of data types and algorithms for sequence analysis, and explain its implementation of generic programming, template subclassing, global interfaces, and metafunctions. The book describes SeqAn's data types for storing strings and alignments, algorithms for pattern matching and finding common motifs, string index data structures, and graphs for automata and alignments. The last section applies SeqAn to the LAGAN genome alignment program, computes multiple alignments with segments, and shows how to incorporate a new algorithm into SeqAn. Annotation ©2010 Book News, Inc., Portland, OR (booknews.com)

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